Protein Info for CSW01_08385 in Vibrio cholerae E7946 ATCC 55056

Annotation: sodium-dependent transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 448 signal peptide" amino acids 15 to 16 (2 residues), see Phobius details amino acids 36 to 36 (1 residues), see Phobius details transmembrane" amino acids 17 to 35 (19 residues), see Phobius details amino acids 46 to 70 (25 residues), see Phobius details amino acids 91 to 118 (28 residues), see Phobius details amino acids 148 to 166 (19 residues), see Phobius details amino acids 177 to 194 (18 residues), see Phobius details amino acids 218 to 242 (25 residues), see Phobius details amino acids 256 to 278 (23 residues), see Phobius details amino acids 309 to 330 (22 residues), see Phobius details amino acids 355 to 381 (27 residues), see Phobius details amino acids 387 to 405 (19 residues), see Phobius details amino acids 426 to 447 (22 residues), see Phobius details PF00209: SNF" amino acids 10 to 125 (116 residues), 69.5 bits, see alignment E=1.3e-23 amino acids 148 to 447 (300 residues), 93.3 bits, see alignment E=7.9e-31

Best Hits

KEGG orthology group: K03308, neurotransmitter:Na+ symporter, NSS family (inferred from 100% identity to vco:VC0395_A1274)

Predicted SEED Role

"Sodium-dependent transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (448 amino acids)

>CSW01_08385 sodium-dependent transporter (Vibrio cholerae E7946 ATCC 55056)
MVANMASGSRGQFTSRFGFIMAAAGSAVGLGNVWGFPTQAASNGGAVFLLVYLCMVFLLA
YPMLVAELTIGRYGQSNPIRAFRSVWPQGKWGAILLGVIGMVVVSLILSFYAIVAGWLVG
SLFGSGLTLIGADSASQWLTSFSTERNLILMVSFMVLTMFVVRNGVANGIEKWSTRLMPL
LFVLFGLLTVYIFTQEGALDGLKMYLVPDLSHFTPDVVVSAMGQAFFSLSLGVCVMTTYG
SYLNKEANLPKTAAQVALIDTGVAFIAGLMVLPAMFVAKHNGVEIFSSSGELLNSDTLVF
TVLPAMFDTMGAVGAVIGIIFFLLMIIAALTSSISMLEVPVACAVEELQQKRSSAVLWIG
GLVTIISGVIVLNFSSLFGLVINFTTVYSQPIIALLITLIAGWIWNRNQILSELKQGCPD
IENSLFWKIWPWYVRLVCPVLMLMVFFA