Protein Info for CSW01_08240 in Vibrio cholerae E7946 ATCC 55056

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 462 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 172 to 194 (23 residues), see Phobius details PF02518: HATPase_c" amino acids 348 to 451 (104 residues), 48.3 bits, see alignment E=6.2e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcm:VCM66_1578)

Predicted SEED Role

"Signal transduction histidine kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (462 amino acids)

>CSW01_08240 ATP-binding protein (Vibrio cholerae E7946 ATCC 55056)
MGISCMPIKSRALRHLSLKTRLLLAAALWLGAMILAAGYLIPNLIHQYLLEDVQNQLQLS
MDEITANLEANPQGQLTLTTRLADPRFTQPYSGLYWSATLGDQTLRSRSLWDRFLTEETH
VHGTIYLGAKEESLIVLKRTVYLPEFSQPITITIGLDDAPLKATLQRVSKELWMILALLF
SGILVLTGVQVTWSLRPLSKMQRELSALRDGQQNALNGDYPQEISPLVNDLNALLFHYQE
LLERARHHAGNLSHALKTPLSVLKNEVTQLNDAQLRIQLQPSVEQIQQQIDYHLGRARMA
GSANILSVKTAPSARVDAISQAFDKVYAERGITLVNELDSDLEVAVEPTDLDEMIGNLLE
NSYKWANSLIRVHSQILSDDWVQICVEDDGAGISATNREKALKRGVRLDETTPGTGLGLN
IVSEMAHSYRGALALGESQLGGLKATLTLKQPTRAAKAVKSH