Protein Info for CSW01_08190 in Vibrio cholerae E7946 ATCC 55056

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 836 transmembrane" amino acids 37 to 59 (23 residues), see Phobius details amino acids 256 to 277 (22 residues), see Phobius details amino acids 307 to 331 (25 residues), see Phobius details amino acids 362 to 383 (22 residues), see Phobius details amino acids 404 to 424 (21 residues), see Phobius details amino acids 431 to 457 (27 residues), see Phobius details amino acids 477 to 497 (21 residues), see Phobius details amino acids 705 to 728 (24 residues), see Phobius details amino acids 749 to 772 (24 residues), see Phobius details amino acids 801 to 823 (23 residues), see Phobius details PF02687: FtsX" amino acids 263 to 387 (125 residues), 54.5 bits, see alignment E=1.2e-18 amino acids 712 to 828 (117 residues), 45.2 bits, see alignment E=8.8e-16

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 100% identity to vco:VC0395_A1235)

Predicted SEED Role

"AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (836 amino acids)

>CSW01_08190 ABC transporter permease (Vibrio cholerae E7946 ATCC 55056)
MKKLRSTWMAVFVCKEDSCMLWPVVKALLGHYRRYPLQICLVWLGLTLGVSLLVGVTAIN
HHARQSYEHGEKLFSNPLPYRIRSKHIANKIPQGLYIQLRRDGFQQCVPFDDYRFSTTSG
LDLILQGIDPVALLSIDNGKPLAQQSGLQLMNPPYPVMVSQELAKLQDWQEGDYIALTDG
SQLGPIVIDRHNQVTGMRVVADLSLVRMLKKGSGLTVIACADMPPAKLDKLKKSLPNGLT
LTRSTRSELESLTQAFHLNLTAMGMLAFLVGIFIFYQAMSLSMVQRQPLVGTLRQIGVNG
WQLAKALLIELLVLVLVSWVCGNVLGLLLANQLIPSVASSLGYLYNANVDLAIGWDWSWS
SYSLLMALLAAFASCTWPLVRLLRSQPIRLSARLSLVRFAGKEFKLQALLACALCVAAVA
IYQAPKSQQSGFAIIGLMLLSVALFTPYIIWTLFTSFSYTLRWVKVRWFFADAAASMSYR
GVATMAFMVALAANIGVETMVGSFRDTTDRWLSQRLAADIYLYPSNSVASRMSQWLGQQP
EVDAVWWRWEKDFASQQGPVQIVSTGASDGELDSLTVKLGVPNYWYHLHHARGVMISESM
ALKLGIRPGDLIDLPEPMGSGWAVFGVYYDYGNPYHQVMMSHQNWMKAFAGTGNVALAVV
LKEGLTGESVKKRLDTIFRLDADRIFDNTNIHSHAMRVFDRTFSIAGTLGNITLFIAVCG
IFFSTLAGETSRLRHISLLRCLGVSGKELVLIGGMQLFVFGAISLLIALPLGLTLAKLVI
DVVIKHSFGWTMQLQMVPGEYVYTVVWSMMALILAGALPIIRLARKSPMKSLREAL