Protein Info for CSW01_08170 in Vibrio cholerae E7946 ATCC 55056
Annotation: aminotransferase class III
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K00836, diaminobutyrate-2-oxoglutarate transaminase [EC: 2.6.1.76] (inferred from 100% identity to vcm:VCM66_1565)MetaCyc: 83% identical to L-2,4-diaminobutyrate aminotransferase/decarboxylase (Vibrio cholerae)
Diaminobutyrate decarboxylase. [EC: 4.1.1.86]; Diaminobutyrate--2-oxoglutarate transaminase. [EC: 4.1.1.86, 2.6.1.76]
Predicted SEED Role
No annotation
MetaCyc Pathways
- norspermidine biosynthesis (6/6 steps found)
- ectoine biosynthesis (5/5 steps found)
- superpathway of polyamine biosynthesis III (7/8 steps found)
- ectoine degradation (1/4 steps found)
- rhizobactin 1021 biosynthesis (2/7 steps found)
- baumannoferrin biosynthesis (2/11 steps found)
- pyoverdine I biosynthesis (2/11 steps found)
KEGG Metabolic Maps
Isozymes
Compare fitness of predicted isozymes for: 2.6.1.76
Use Curated BLAST to search for 2.6.1.76 or 4.1.1.86
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (961 amino acids)
>CSW01_08170 aminotransferase class III (Vibrio cholerae E7946 ATCC 55056) MSTAFEVDNHIATLFSTQVPLLDGLYDLTPDQVLLDQAAHESEVRSYPRRIPIAIKQAYG CLVEDTRGQIFLDCLAGAGTLVLGYNHPEINQALKAQLDSGLPYQTLDIATEAKTHFIKT VKGFLPKALGEDCVIQFCGPSGADAVEAAIKLAKQTTGRNTMFAFRGAYHGMTNGTMGMM GNLNTKARRTGLMSDVHFMPFPYSLRCPFGLGGDEGAKASIRYIERLLNDDEAGIMKPAA IIVEPVQGEGGVIPAPAFWLRELRRICDEHGILLIFDEIQCGVGKTGHNFAFEESGIIPD VLCLSKAIGGGLPMSILVINKKHDTWRPGEHTGTFRGNQLAMVSGAKALEIIQRDNLVEH ARIAGQYLRAGLEKIQSRVNCVAEVRGKGLMLGLEIKDPSGELNKFGEPKSAPQLTLAIQ RAALERGLMVEKGGRDGSVIRFLPPVIISFEQLDFALRVLEEAILAAGGGKKDPEQVNQE WKKHFIHTGHMGSQEFSQVMNHTTAAMKAVFEEVKAPYSGLDPKVLEEAIYAVDLDNKNA SLKEVISETAELIAKNSIMVQHPDCIAHLHTPPLMPSVVAEAIIASLNQSMDSWDQSSAA TFVEQKVVDWMCEKYELGAQADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPE YADKLRIVCSKKSHFTVQKSASWMGLGEKAILAVDALPNGTMDVTKLEAAVEQAKAEGLI PFAIVGTAGTTDHGAIDDLVTIADVAEKHALWMHVDSAYGGALILSSHKDRLNGIERAQS ISVDFHKLFFQTISCGALLLKDKHNFKYLLHHADYLNREHDTLPNLVDKSISTTKRFDAL KVFMTMQNVGPKQLGAMYDHLLAQTLQVAELVRQHQSFELLAEPSLSTVLFRAVNEQAAD LDELNKAVRLQALVRGVAVLGETIVDGKTALKFTILNPCLTMSDFDSLLVKIEALAAELA N