Protein Info for CSW01_07570 in Vibrio cholerae E7946 ATCC 55056

Annotation: nucleotide-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 160 PF04461: DUF520" amino acids 2 to 159 (158 residues), 211.7 bits, see alignment E=3.6e-67

Best Hits

Swiss-Prot: 100% identical to Y2315_VIBC3: UPF0234 protein VC0395_A1115/VC395_1627 (VC0395_A1115) from Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)

KEGG orthology group: K09767, hypothetical protein (inferred from 100% identity to vch:VC1508)

Predicted SEED Role

"FIG001943: hypothetical protein YajQ"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (160 amino acids)

>CSW01_07570 nucleotide-binding protein (Vibrio cholerae E7946 ATCC 55056)
MPSFDIVSEIDAVELRNAVENSTRELASRFDFRNVDASFELKEETVKLAAEDDFQLGQMM
DILRGNLAKRGVDARAMKAKDSVHIGKNWYKEAEFKQGLEALLAKKIVKLIKDAKIKVQA
SIQGDKVRVTGKKRDDLQEVMAMLREANLEQPLQYNNFRE