Protein Info for CSW01_06980 in Vibrio cholerae E7946 ATCC 55056

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 468 transmembrane" amino acids 16 to 32 (17 residues), see Phobius details amino acids 50 to 70 (21 residues), see Phobius details amino acids 82 to 101 (20 residues), see Phobius details amino acids 107 to 129 (23 residues), see Phobius details amino acids 141 to 162 (22 residues), see Phobius details amino acids 168 to 187 (20 residues), see Phobius details amino acids 201 to 220 (20 residues), see Phobius details amino acids 226 to 245 (20 residues), see Phobius details amino acids 265 to 286 (22 residues), see Phobius details amino acids 299 to 318 (20 residues), see Phobius details amino acids 330 to 347 (18 residues), see Phobius details amino acids 354 to 374 (21 residues), see Phobius details amino acids 395 to 413 (19 residues), see Phobius details amino acids 433 to 458 (26 residues), see Phobius details PF07690: MFS_1" amino acids 22 to 401 (380 residues), 168 bits, see alignment E=2.9e-53 PF00083: Sugar_tr" amino acids 51 to 184 (134 residues), 28 bits, see alignment E=1.1e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcj:VCD_002954)

Predicted SEED Role

"multidrug transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (468 amino acids)

>CSW01_06980 MFS transporter (Vibrio cholerae E7946 ATCC 55056)
MHFDPIPAADAPHPRIIFASVALVIALGSLEKSIVTTPLALIGQDLSAGTALTWVITAYL
LAATAVLPVYGKLSDLFGRVRMLNISIGIFIVGSAMCTFAVDLPTLIGARVVQGIGGGGL
IALAFTVIADSIPAREVGKYQGYISAVYAVSSVAGPLLGGYFADHLSWRWVFGINLPLGM
VALYMVNRHLRHLNQKRHSRFDWLGAGLLMLTTTLLLLQLSSHSFLPAGWGAFALLLCLV
LLILVERQVSDPILPARLARLPSYLTAIGLIMASQMLMFALLVYMPLQLQWQKGFSPSQS
GTVMVIFMFSITTGAYLGGKWVARSGRYKALVVSGFLLAAVAIWQIHYDLWVHLSLGIGG
LGLGFTLPSLNVVVQSVLPARDRGIGMSLFNFGRELGGALGVAFCSALFYLRVPQSVTVS
EHGSQASSVTPDVLAQGFSLVYIGMSALAVVAMILTAWRLRKDALKGH