Protein Info for CSW01_06855 in Vibrio cholerae E7946 ATCC 55056

Annotation: amino acid ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF00497: SBP_bac_3
  • amino acids 39 to 257 (219 residues), 103.3 bits, E=1.5e-33

Best Hits

Swiss-Prot: 62% identical to AAPJ_RHIL3: General L-amino acid-binding periplasmic protein AapJ (aapJ) from Rhizobium leguminosarum bv. viciae (strain 3841)

KEGG orthology group: K09969, general L-amino acid transport system substrate-binding protein (inferred from 100% identity to vcm:VCM66_1317)

Predicted SEED Role

"Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Protein Sequence (342 amino acids)

>CSW01_06855 amino acid ABC transporter substrate-binding protein (Vibrio cholerae E7946 ATCC 55056)
MANKLTVLASVVAASSAMLSLSASAAESTLDKVLSQGFITCGVSTGLPGFSNPNAKGEWE
GIDVEYCQAMAAAVLGDKTKVKFVPLTAKERFTALQSGEIDVLSRNTTWTLQRDSALGLN
FVGVNYYDGQGFMVKKDLGVKSAKELNGASVCVQSGTTTELNLADYFRNSGMTYKPVVFD
TAAQTSKGFDAGRCDVLTTDQSGLYALRLNLEKPDSAVVLPEIISKEPLGPVVRQDDDKW
FNVAKWVLYAMVNAEEYGITSKNVDEMMKSDNPEVKRILGLDGPKGTGLGIRDDWSYQIV
KQVGNYGESFDRTVGSGSPLKIDRGVNALWNAGGFMYAPPIR