Protein Info for CSW01_06670 in Vibrio cholerae E7946 ATCC 55056

Annotation: penicillin-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1023 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details transmembrane" amino acids 39 to 41 (3 residues), see Phobius details PF00912: Transgly" amino acids 144 to 339 (196 residues), 59.2 bits, see alignment E=3.7e-20

Best Hits

KEGG orthology group: None (inferred from 100% identity to vco:VC0395_A0939)

Predicted SEED Role

"Membrane carboxypeptidase (penicillin-binding protein)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1023 amino acids)

>CSW01_06670 penicillin-binding protein (Vibrio cholerae E7946 ATCC 55056)
MASDSIPRRVLKKRRRAQKNKPRYWLIAVLLIGTAGGAALFHEMETSTLQSREISRYAAG
LTYQVEPGASDKIAFPSYGPFDQRLGYVALPNIQERLLQRGFTIRQQVRFSDELQRYAQY
GLYVPYTEKVQAGLTLFDCRTEPVYQFRYPGNHYADFNAIPDLIVQSLLFIENRDLLSDK
NPLVNPAVDWPRFFKAALTQVGKALDLDGQSAGGSTLATQVEKYRHSEDGLTYSPQEKIR
QMVSASVRAYRLGANTLEARKLVVWAYLNSVPLSAAPGYGEVHGLGDGLWVWFAADPERV
NQLLDTRLNQSVNLAEQGLALRQVVALMIAHRRPSYYLAVSGRPDLNALTDSHIRLFYRE
KMISKSLMDAALNATLQFRDFVRQPAVTRINTNKGLLAARTHLSRQLGVSLYDLDRMDLS
ASTTLNFELQSEVTRYLQKLANPEYAAQVGILGFRLLAAEKTADVRYSFTLFERTDEGFK
VRVQTDNTNQPFDLNEGSKLELGSTAKLRVLTTYLEIIAKLHSKYHDLSVMELRRHLVEA
QDTLSVWSLEWLLTSPKRDLATMLEAALEREYSADPKERFFTGGGIHTFNNFRKEDDERI
VTMRDALRESINLPFVRLMKDIERYTLYSEGYRAQLMKDDKDPRRMEYLRQFADKEGRAY
LLRFWRKYKDKTTDERMATLLEGLKPSADRLAAVHRYLLPEASVSEFVRFMDDKLPPITR
DKLTDKQLEKLYNKYGRGKYSLPDQGYIARVHPLELWLLGYLNEHHQASFSDVVAASSDK
RQEVYSWLFKTRHRNARDSRVRTMLEVEAFTDIHQSWQRLGYPFDHLVPSLATALGSSGD
RPAALSELMGIILNDGVRVPTKRINHLHFAQDTPFETEFTPVETQGVRVLPVEVARALRG
ALSQVVDSGTARRISGVFKLPDGTPIVLGGKTGTGDNRLQTVNRAGTVVQSLARNRTATF
VFYLGDRHFGTLTAYVAGSDSEKFTFTSALPVQVLKGMAPILSPYLAPNEQECRPTMNPS
STQ