Protein Info for CSW01_06600 in Vibrio cholerae E7946 ATCC 55056

Annotation: TIGR01620 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 339 transmembrane" amino acids 64 to 82 (19 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 207 to 226 (20 residues), see Phobius details amino acids 254 to 273 (20 residues), see Phobius details TIGR01620: TIGR01620 family protein" amino acids 63 to 333 (271 residues), 233.2 bits, see alignment E=1.9e-73 PF05128: DUF697" amino acids 175 to 333 (159 residues), 173.4 bits, see alignment E=1.6e-55

Best Hits

Swiss-Prot: 64% identical to Y2076_VIBVY: UPF0283 membrane protein VV2076 (VV2076) from Vibrio vulnificus (strain YJ016)

KEGG orthology group: K08990, putative membrane protein (inferred from 100% identity to vcj:VCD_003029)

Predicted SEED Role

"Membrane protein YcjF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (339 amino acids)

>CSW01_06600 TIGR01620 family protein (Vibrio cholerae E7946 ATCC 55056)
MSDLKTKQIFSEPLQGSLETPSLTAQQQFSAQEKFVPMNMEVPAEEALEAELDTIIRPSK
GRKWFAGGLFAAFSGLVAWQAIDSVVQAIQDLDWLSLGWVGFISALATLGLGAIAKELWK
LRRLRQHFSVQEQAQILMENDAVCQGQAFCEQIAKQGKVDKQGYQRWLSALNSSHSDAEI
LDLYDALVVGEQDKQASQIVTRYATEAAALVAISPLAIADMLLVAWRNFSMVDQLAKVYG
VELGYWSRIKLFKAVLLNMALAGASELAVDASVDLFSMDLAGRLSARAGQGVGVGILTAR
LGIKAVGLLRPLPWHPDRQLKLSAVRKQVVSKVAALLAK