Protein Info for CSW01_06515 in Vibrio cholerae E7946 ATCC 55056

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 631 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 277 to 303 (27 residues), see Phobius details PF02743: dCache_1" amino acids 44 to 262 (219 residues), 85.5 bits, see alignment E=8.6e-28 PF22673: MCP-like_PDC_1" amino acids 93 to 177 (85 residues), 44 bits, see alignment E=5.5e-15 PF00672: HAMP" amino acids 297 to 350 (54 residues), 42.5 bits, see alignment 1.3e-14 PF00015: MCPsignal" amino acids 431 to 596 (166 residues), 138.3 bits, see alignment E=4.7e-44

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 100% identity to vcj:VCD_003061)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (631 amino acids)

>CSW01_06515 methyl-accepting chemotaxis protein (Vibrio cholerae E7946 ATCC 55056)
MFDIMKLTLKHKLIGASLSAVVVMATALTWFSASQLQQQTSNAVYTRADAISSTAAKGIS
DWISIRKSISTAFNAHIEAQNVVPYLQQARNAGGFDDIFYGTTDGAMYRSHPERNRADYD
PRTRPWYKDAASAGKQIITTAYSDAITGALLVTIAEPVRLNGNMSGVVGADVLIDQLIAD
VISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTIERAANQGELLALK
LNGVEKFFFFTAVPDTPWYFAVQMDSDTEYASHSELLTGLITTALLITVIVVVIVSWLVS
FLFRDLGRVSKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFVSNMHTMVLKLSHVS
AALAQQSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQNAGEAV
TACVHGAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQTNLLAL
NAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIMDDSRR
LADTSVDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNTVGIRDVSND
LAQEAHSAAEQAAELSELSHELEQEIRRFKL