Protein Info for CSW01_06420 in Vibrio cholerae E7946 ATCC 55056

Annotation: DUF2982 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 238 transmembrane" amino acids 28 to 50 (23 residues), see Phobius details amino acids 55 to 74 (20 residues), see Phobius details PF11201: DUF2982" amino acids 81 to 230 (150 residues), 203.7 bits, see alignment E=5.6e-65

Best Hits

KEGG orthology group: None (inferred from 99% identity to vco:VC0395_A0889)

Predicted SEED Role

"FIG01199633: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (238 amino acids)

>CSW01_06420 DUF2982 domain-containing protein (Vibrio cholerae E7946 ATCC 55056)
MTIIWATRPKSEKGMPTLQLYNHQIHFTPFVIKGLLALAGLITLVVIGIAESLLQAVVGI
LALMAWAGIAYWLMLKGQVAYTLTATHLQQHFYQGGWVVKWNNISQIGVCSYEREGWHQP
LPWVGIRLKHYAPYLNSICPRLSTQLLLSQRALLYLGAQQKARHHQFEDLVLDSTPYVDA
EGKQYTGLQAMLANRMQYQRDFFGYDIFISEQDLDRSAEEFVGLARRYLAAAEPEDLQ