Protein Info for CSW01_06045 in Vibrio cholerae E7946 ATCC 55056

Annotation: lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 223 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 36 to 54 (19 residues), see Phobius details amino acids 65 to 83 (19 residues), see Phobius details PF13441: Gly-zipper_YMGG" amino acids 35 to 82 (48 residues), 35.9 bits, see alignment 7.5e-13 PF13488: Gly-zipper_Omp" amino acids 39 to 87 (49 residues), 41.4 bits, see alignment 1.6e-14 PF00691: OmpA" amino acids 119 to 213 (95 residues), 71.1 bits, see alignment E=1.3e-23

Best Hits

Swiss-Prot: 48% identical to YIAD_ECOLI: Probable lipoprotein YiaD (yiaD) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to vcj:VCD_003149)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (223 amino acids)

>CSW01_06045 lipoprotein (Vibrio cholerae E7946 ATCC 55056)
MLNKTTLLLAAVVALSGCQATQRQNATTGETETNATTKGALLGVLAGAAVGLATGDDAKE
RRKHALIGAAGGAAVGGGIGYYFDQQEAELRKALLDSGVQVVRVGENQLMLRMENGIGFT
SNSYQLDSYIHKTLRGVARILVEYPDTSLVIEGHTDSTGSDTTNQVLSEKRAESVRSFLL
SQGVAAGRAIARGNGERFPLCSNNTAEGRACNRRVEIQILPLK