Protein Info for CSW01_05885 in Vibrio cholerae E7946 ATCC 55056

Annotation: gonadoliberin III

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 502 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 308 to 327 (20 residues), see Phobius details amino acids 338 to 366 (29 residues), see Phobius details amino acids 376 to 400 (25 residues), see Phobius details amino acids 407 to 425 (19 residues), see Phobius details amino acids 437 to 455 (19 residues), see Phobius details amino acids 467 to 487 (21 residues), see Phobius details PF14400: Transglut_i_TM" amino acids 25 to 183 (159 residues), 187.8 bits, see alignment E=1.4e-59 PF14402: 7TM_transglut" amino acids 255 to 498 (244 residues), 357.2 bits, see alignment E=4.9e-111

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcj:VCD_003182)

Predicted SEED Role

"FIG139976: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (502 amino acids)

>CSW01_05885 gonadoliberin III (Vibrio cholerae E7946 ATCC 55056)
MTSKIPFYISVFLLFATGITLSVLRHQDYGVPWTPGETRQVWDIEARIEFAAQGKEAKVS
LAAPLTQEGYTLINETASSPGYGISYLNTESGRRIEWSIRQASGPQTIYYKAQFLVDPQA
KAVQIPPTQPITKPAFDGPEESAAIALIDSASQRSADHVTFARELIKGLNDSESQNASLL
LNKMSKVDATQKLLSYALVPNKVVGVIQLEDGRRRQSIQHMNEVWNGSAWILFNPETGTQ
PTHPNLLVWDESNVSLLDVVGGQNSQVMFSMISQKVSPQQATDSKVEADGLLNLSIHSLP
LEEQAMFKTIMLIPIGALIVVFLRVIVGLKTSGTFMPVLIAVAFVQTQLTTGIVGFLLIV
GTGLIIRSYLSKLNLLLVARISAVIITVILIISVFTVVAFKVGLTEGLTITFFPMIILSW
TIERMSILWEEEGAKEVLLQGGGSLFTAILIYLAMTNTYVQHLTFNFIGLQLVVLAAILL
LGTYTGYRISELRRFKPLVEEK