Protein Info for CSW01_05840 in Vibrio cholerae E7946 ATCC 55056

Annotation: DUF340 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 301 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 35 to 54 (20 residues), see Phobius details amino acids 62 to 83 (22 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 130 to 149 (20 residues), see Phobius details amino acids 167 to 188 (22 residues), see Phobius details amino acids 202 to 230 (29 residues), see Phobius details amino acids 249 to 266 (18 residues), see Phobius details amino acids 277 to 299 (23 residues), see Phobius details PF03956: Lys_export" amino acids 112 to 296 (185 residues), 183.6 bits, see alignment E=1.4e-58

Best Hits

KEGG orthology group: None (inferred from 100% identity to vco:VC0395_A0721)

Predicted SEED Role

"Putative surface protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (301 amino acids)

>CSW01_05840 DUF340 domain-containing protein (Vibrio cholerae E7946 ATCC 55056)
MLSGMIFVFAPLVVGYLFIIRNPSHLHRLSRATSHLVYVILFLMGLSLAGLDNLQSNLQT
IVKYTAVFFVVLGTCNLLVLPLVDRYLPLSTDITHKKVPLSSMMLESAKLILVVGAGLVA
GVLLNQDLHWVESASGWILFLLLFFIGIQLRNSGLSLKQILLNKHGMVIAAVIILTSWLG
GVIAAWLLDMPIYQALAMASGFGWYSLAGILVGDAFGPVLGGASFMIELLRELVALVLIP
MLIRRKPCTAIGYAGATAMDFTLPVIQTTGGVKCVPVAIVSGFILSLLVPVLILFFVSLA
S