Protein Info for CSW01_05425 in Vibrio cholerae E7946 ATCC 55056

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 247 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 56 (28 residues), see Phobius details amino acids 67 to 85 (19 residues), see Phobius details amino acids 91 to 110 (20 residues), see Phobius details amino acids 121 to 138 (18 residues), see Phobius details amino acids 150 to 179 (30 residues), see Phobius details amino acids 191 to 213 (23 residues), see Phobius details amino acids 221 to 239 (19 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcm:VCM66_1021)

Predicted SEED Role

"FIG01200141: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (247 amino acids)

>CSW01_05425 hypothetical protein (Vibrio cholerae E7946 ATCC 55056)
MILSALQFLIAILFSIVAAYVAGLSEGDIPIIAFLIPALWLLPKSGFSSVVMLLAMGIFG
LTLPLQPVALSISQWVLIPLLMVAFSPRSNWGVILVSALIVLTLQVGIMVTQSAGKLEGS
PMVTVVQIVMVMLIWWAARGWKPNHAHSWWALALVIPLWVAEQFYAVTLALLITGIIAAC
ENLIPKATPSLNWGSLLGWSLPCVSFAALVVSPATEVPNPVFVVWICILVTAWTTDYVLK
STEEAHE