Protein Info for CSW01_04955 in Vibrio cholerae E7946 ATCC 55056

Annotation: cell division protein ZipA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 291 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details TIGR02205: cell division protein ZipA" amino acids 3 to 281 (279 residues), 407.6 bits, see alignment E=2.3e-126 PF04354: ZipA_C" amino acids 153 to 280 (128 residues), 157.1 bits, see alignment E=1e-50

Best Hits

Swiss-Prot: 100% identical to ZIPA_VIBCH: Cell division protein ZipA (zipA) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K03528, cell division protein ZipA (inferred from 100% identity to vch:VC0970)

Predicted SEED Role

"Cell division protein ZipA" in subsystem Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (291 amino acids)

>CSW01_04955 cell division protein ZipA (Vibrio cholerae E7946 ATCC 55056)
MQELRFVLIIVGALAIAALLFHGLWTSKKEGKSKFGDKPLRKMKVESDDPPSRAFAAEDD
FEIIRKERKEPDFGIPNQQHDPLISDFAAHDELDEEEDEEARIPVQPQSQPQPRKVQPQV
EMPRVAPNVPMAKVQPEVVTEIEVQEPQEEKLDVIVLNVHCAGNQPFIGTKLFDSMQQNG
LLFGEMDIFHRHADLSGTGKVLFSVANMMQPGTLMHDDPADFSTKGISFFMTLPCFGDPE
QNFKLMLKTAQQIADDLGGHVLDDARNLMTPNRLDAYRKQIQEFKVRAAQA