Protein Info for CSW01_04745 in Vibrio cholerae E7946 ATCC 55056

Annotation: glycosyltransferase family 1 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 transmembrane" amino acids 61 to 83 (23 residues), see Phobius details PF20706: GT4-conflict" amino acids 141 to 343 (203 residues), 35.8 bits, see alignment E=9.8e-13 PF00534: Glycos_transf_1" amino acids 188 to 340 (153 residues), 131 bits, see alignment E=6.9e-42 PF13692: Glyco_trans_1_4" amino acids 188 to 326 (139 residues), 122.6 bits, see alignment E=3.2e-39 PF13524: Glyco_trans_1_2" amino acids 213 to 352 (140 residues), 31.5 bits, see alignment E=3.2e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to vch:VC0925)

Predicted SEED Role

"polysaccharide biosynthesis protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>CSW01_04745 glycosyltransferase family 1 protein (Vibrio cholerae E7946 ATCC 55056)
MYHQGCTVRKNINLMIATDLKGQGGVATVVSTYADCGFLEENHIKLIASHSSLDHGQKWR
MTLRFMLALCQLLYCFMRYRVGIVHIHMSSRGSYRRKSVIIRLVKLLKGKVILHLHGAEF
RDFYRDECNMVQQRHIRHTFALADHVLVLSTQWLAWLQEVIGRTQGVSVLYNAVPSLALD
RHLAQPGRIAFLGRLGTRKGVGDLIQAFALVKQRCPEAQLYLAGDGEIETYQAMAEQLGL
NGSVHCLGWIAGEAKLKLLTQTDIYCLPSYNEGFPMGVIEAMSAGIPVVASRAGGIPDAI
SDGEQGRLIEAGDVVALAQALGDLIEQRAENQRIATAAKQKFAENFSLQAVIPRLQTLYD
ELLKS