Protein Info for CSW01_04350 in Vibrio cholerae E7946 ATCC 55056

Annotation: accessory colonization factor AcfD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1520 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13322: DUF4092" amino acids 392 to 565 (174 residues), 327.5 bits, see alignment E=3.3e-102 PF17291: M60-like_N" amino acids 1084 to 1166 (83 residues), 29 bits, see alignment 1.3e-10 PF13402: Peptidase_M60" amino acids 1179 to 1470 (292 residues), 120.9 bits, see alignment E=1.1e-38

Best Hits

Swiss-Prot: 100% identical to ACFD_VIBC3: Accessory colonization factor AcfD (acfD) from Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)

Predicted SEED Role

"Accessory colonization factor AcfD precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1520 amino acids)

>CSW01_04350 accessory colonization factor AcfD (Vibrio cholerae E7946 ATCC 55056)
MKIRIVSLIVLGFLIGCKHESIITPTVPADGSGGNALNPGLVGGYLPDIGVPDPIISLSM
TLDGNLKFDSSLLCNDQDASHFQISQKDNVFCTINGRSIATFTAPFDANKNGRNTDSEVL
SLISADEYRDSPVRQENLQILMKNMATIHGDKISLVFRSTLDALTFENYLRHNLDLPKDQ
FLEAITEKIANDNQVDKQPSTHVPNISPSFTPGTSSNLNSPFVSANAEESLSYIPTDVIP
SLGRLLDSQGRVINGVSYFSNNTRGITGVDKTGAILNDGSFEFSWGDIISFSIDTFELGS
TRANKTDFYISELGKDNEGKNAEALIHRYASIDDSKLIIPDKVTQIFSLYPNVINEVISL
SLPNGDIELDIGDGKTQIVPGEFFKQFDSGLAALIDQSISPISRFKFEDSLPKKKSAIDS
ESSQIQDIINKLWGATDTVQANGWKKVDRFHIFHDSTNFYGSTGSARAQAAVNIANSAFP
VLMARNDNNYWIDFGKPKAWDSNSLAFITEAPSTVVPDKVSEDTSTFNLPFISLGEIGKG
KLMVLGNARYNSVLVCPNGFSWGGTVKNGTCSLSSDRDDMANFFSNVIRYLTGSTSNDVI
VGTNIPEVYFKSSGQTMGSKANFELDSRFSKQTQQLTSFHDLDVNTIPLIIINAYDYKGK
NINSPYDIPLSADVGSPKLSRSDVTDLIDYINNGGSVLMMETIINTNNSEISRLLDSAGI
AFGIGNSVVADGNGPSGGHPDRPRSQREHGIWVIERYAAVEDESSGQQTLPYVINSDGSI
EWKYIVENRPDDKPKLEVASWVESEAGDKLITHYAFIDESQHWKKDISGKIIYNVAGKPE
VDNASLSLAKNKVLDAFKNSSGQRAYSECKNSEFHYEINCLEYRPGNSIPITGGLYVPRY
TDIKLGESEANAMVKAANLGTNIHALYQHERYFRTKGKSGARLNSVDLNRIYQNMSVWLW
NDLDYRYDDKQSDELGFKVFTQYLNCYTSNNAGGNTTCPEELKDELTQLGMIYDEKSGSY
AGQMDPSYPLNYMEKPLTRLMLGRSFWDLDIKVDVRKYPGEVTTRSGGGDITLDMRNNTA
AWFAGNRQPTGQWAEAHQPFSVSVSGETSPVTITIALADDLTGREKHELGLKRPPRMSKS
FVIGGDSPKMQTFTVPYGGLIYAQGGNSQQVKLTFSGTIDAPLYIDGKWRNPLLSGAPIG
EVVSDTFIFTAPKANLNADGYLGGIEQFAKDLDQFSADLNDFYARDEGADGDKNRKATDK
SMPNNRHHFVNDVAISVGAAHSGYPVMNDSFITSSRSLNTMPLNSWLLWHEVGHNSAEAP
FNVDGATEVVNNLLALYMQDRHQGKMSRVEQDIRYAFDFVNAEHGHAWGAGGAGERLVMF
AQLKEWAETEFDINDWYNDKLPGFYIEESGIKGWNLFKLMHRLMRNENDDQINMKGENQC
KISGIGKSDLLMLCASYAAQTDLSEFFKAWNPGSKAFLYPDDPQPYYEGGITPSGIQRVK
SLKLNLPQKNPLSINSVTQH