Protein Info for CSW01_03530 in Vibrio cholerae E7946 ATCC 55056

Annotation: sulfite exporter TauE/SafE family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 264 transmembrane" amino acids 6 to 39 (34 residues), see Phobius details amino acids 48 to 70 (23 residues), see Phobius details amino acids 82 to 101 (20 residues), see Phobius details amino acids 108 to 128 (21 residues), see Phobius details amino acids 140 to 164 (25 residues), see Phobius details amino acids 179 to 202 (24 residues), see Phobius details amino acids 214 to 234 (21 residues), see Phobius details amino acids 246 to 263 (18 residues), see Phobius details PF01925: TauE" amino acids 9 to 261 (253 residues), 181.2 bits, see alignment E=1.3e-57

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcj:VCD_003648)

Predicted SEED Role

"Protein of unknown function DUF81" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (264 amino acids)

>CSW01_03530 sulfite exporter TauE/SafE family protein (Vibrio cholerae E7946 ATCC 55056)
MNIELLAILLLLGAVVGVLAGLLGIGGGLLVVPALLFLLPYAGISTEIVMQLALATSLAT
IILTSGSSALNHLKLGNVDVFVVKWLMPGVVVGGFLGSVVAEWIPSQYLPKVFGVIVLCL
SVQMYRSIRALQNHPMPSAWITTLCGTGIGVISSLAGIGGGSLSVPFLNRHGIEMKKAIG
SSSVCGFAIAISGMIGFILHGYQVENLPQYSLGYVYLPALLAIATTSMLTTRIGAKLATQ
MPTARLKRFFAIFLMCVAVTMLFQ