Protein Info for CSW01_03255 in Vibrio cholerae E7946 ATCC 55056

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 341 signal peptide" amino acids 1 to 36 (36 residues), see Phobius details transmembrane" amino acids 106 to 131 (26 residues), see Phobius details amino acids 138 to 162 (25 residues), see Phobius details amino acids 168 to 186 (19 residues), see Phobius details amino acids 217 to 238 (22 residues), see Phobius details amino acids 274 to 298 (25 residues), see Phobius details PF12911: OppC_N" amino acids 4 to 42 (39 residues), 36.2 bits, see alignment 4.4e-13 PF00528: BPD_transp_1" amino acids 122 to 304 (183 residues), 71.3 bits, see alignment E=9.3e-24

Best Hits

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 100% identity to vco:VC0395_A0147)

Predicted SEED Role

"(GlcNAc)2 ABC transporter, permease component 2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (341 amino acids)

>CSW01_03255 ABC transporter permease (Vibrio cholerae E7946 ATCC 55056)
MKALWKLLRGNRMAMIGVTILGLFFLLAVAAPLLTSHEPDKRTGNPHEYPAFVVKAAKAN
PDGWIAENLATDRRTLAMSKKADHILGTTRMGRDVWSQVAYGARVSLAVGFGAGITVCFL
ATVIGVSAGYFGGKIDDFLTAAMNIMLVIPQYPLLFVLAAFIGEAGPLTIALIIGCTSWA
WGARVVRSQTMALREKEFVKAAEVLGESSWRIIFIEILPNLISIVGASFIGSVMYAIMME
ATISFLGLGDPNTISWGIMLYNVQTSSSMLIGAWWELLAPCLSLTLLVTGLALLNFAVDE
IANPQLRSHKGMKRWKNLAKQDQKAREPNVPPQNALWSGDK