Protein Info for CSW01_03015 in Vibrio cholerae E7946 ATCC 55056

Annotation: outer membrane-stress sensor serine endopeptidase DegS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details TIGR02038: periplasmic serine peptidase DegS" amino acids 2 to 350 (349 residues), 605.8 bits, see alignment E=1.2e-186 PF00089: Trypsin" amino acids 66 to 235 (170 residues), 71.8 bits, see alignment E=1.9e-23 PF13365: Trypsin_2" amino acids 80 to 214 (135 residues), 118.6 bits, see alignment E=1e-37 PF13180: PDZ_2" amino acids 255 to 345 (91 residues), 54 bits, see alignment E=4.4e-18 PF17820: PDZ_6" amino acids 282 to 321 (40 residues), 33.4 bits, see alignment 7.8e-12

Best Hits

Swiss-Prot: 55% identical to DEGS_ECOLI: Serine endoprotease DegS (degS) from Escherichia coli (strain K12)

KEGG orthology group: K04691, serine protease DegS [EC: 3.4.21.-] (inferred from 100% identity to vcm:VCM66_0523)

Predicted SEED Role

"Outer membrane stress sensor protease DegS" in subsystem Proteolysis in bacteria, ATP-dependent

Isozymes

Compare fitness of predicted isozymes for: 3.4.21.-

Use Curated BLAST to search for 3.4.21.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (352 amino acids)

>CSW01_03015 outer membrane-stress sensor serine endopeptidase DegS (Vibrio cholerae E7946 ATCC 55056)
MLKFWVRSISLGLLAAIAIIMVTPSLRAKLMPVVEQPRNIGALQISFNEAVRKAAPAVVN
IYNRKYSENDRRKLSIQGLGSGVIVSEKGYIITNYHVVAQADQIVVALQDGRAAAAQLVG
KDRRTDIAVLRVEGTGLPVIPLNPDYHPKVGDVVLAIGNPYNLGQTTTFGIISATGRSSI
SADGRQAFIQTDAAINDGNSGGALVNTQGELVGINTASFQQATDLETYGISFAIPYSLAS
KIMTKIIADGRVIRGYIGVDGQDINSMTSRLLGNEHVGGIIILGVDPNGPAARAGFLEQD
ILLKIDGKKINGRQNVTDTVTDLRPGTVVDFTLLRKGEEIVLPVTIGEDTRD