Protein Info for CSW01_02830 in Vibrio cholerae E7946 ATCC 55056

Annotation: murein hydrolase activator NlpD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF01476: LysM" amino acids 48 to 90 (43 residues), 45.9 bits, see alignment 4.5e-16 PF01551: Peptidase_M23" amino acids 212 to 306 (95 residues), 111.4 bits, see alignment E=1.9e-36

Best Hits

KEGG orthology group: K06194, lipoprotein NlpD (inferred from 100% identity to vco:VC0395_A0061)

Predicted SEED Role

"Lipoprotein NlpD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (311 amino acids)

>CSW01_02830 murein hydrolase activator NlpD (Vibrio cholerae E7946 ATCC 55056)
MTLYSFRLGLLLFCSLLFGCTAPTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIA
YLTDKDVNDLISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVA
KAATTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVN
VAKAKPSDEKIAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNA
LRGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQ
GKSVNPKRYLP