Protein Info for CSW01_02305 in Vibrio cholerae E7946 ATCC 55056

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 161 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 59 to 59 (1 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 134 to 155 (22 residues), see Phobius details PF12821: ThrE_2" amino acids 17 to 150 (134 residues), 119.3 bits, see alignment E=1.3e-38 PF06738: ThrE" amino acids 18 to 148 (131 residues), 28.4 bits, see alignment E=1.1e-10

Best Hits

Swiss-Prot: 59% identical to Y3642_PECCP: UPF0442 protein PC1_3642 (PC1_3642) from Pectobacterium carotovorum subsp. carotovorum (strain PC1)

KEGG orthology group: None (inferred from 100% identity to vch:VC0439)

Predicted SEED Role

"FIG001826: putative inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (161 amino acids)

>CSW01_02305 hypothetical protein (Vibrio cholerae E7946 ATCC 55056)
MGVVMLSWDLFFGLLNDMFFAAIPAVGFALVFNVPVPALKYCALGGALGHGSRYLMMHFG
VPIEWASFFAATLVGMVGVYWSRRFLAHPKVFTVAALIPMVPGVFAFKAMIALVEINHVG
FSPELMEALLENFLKAMFIIAGLAVGLAVPGLLFYRRKPII