Protein Info for CSW01_02300 in Vibrio cholerae E7946 ATCC 55056

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 transmembrane" amino acids 15 to 32 (18 residues), see Phobius details amino acids 149 to 167 (19 residues), see Phobius details amino acids 173 to 189 (17 residues), see Phobius details amino acids 201 to 223 (23 residues), see Phobius details amino acids 229 to 249 (21 residues), see Phobius details amino acids 261 to 287 (27 residues), see Phobius details PF06738: ThrE" amino acids 46 to 283 (238 residues), 228.7 bits, see alignment E=3.7e-72

Best Hits

Swiss-Prot: 51% identical to YJJP_SHIFL: Inner membrane protein YjjP (yjjP) from Shigella flexneri

KEGG orthology group: None (inferred from 100% identity to vco:VC0395_A2856)

Predicted SEED Role

"FIG023911: putative membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (289 amino acids)

>CSW01_02300 hypothetical protein (Vibrio cholerae E7946 ATCC 55056)
MPQLSCGFFVSKSTFLKFVSGTLTLSSAYLGFRKGIMESKQRAVSRLIAQAGQMLLAHGA
ESTLVGDIMRRMGLASGMSEVEVSLSASSLVVTTVYKEHCITTARRSPDRGINMRVVTQI
QRICIMMEKGILDHSLAQRKLNHISPERYNRWLVVVMIGLSCAAFSRLAGGDWMVFLITL
IASSVGMIVRQEIGHRQFNPLINFAATAFVTSVISAQAVIYQLGNKPTIVMASSVLMLVP
GFPLINAVADMLKGYINMGIARFVMASLLTLATALGIVAAMSITGIWGW