Protein Info for CSW01_02210 in Vibrio cholerae E7946 ATCC 55056

Annotation: DUF3971 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1291 signal peptide" amino acids 1 to 11 (11 residues), see Phobius details transmembrane" amino acids 12 to 32 (21 residues), see Phobius details TIGR02099: TIGR02099 family protein" amino acids 7 to 1279 (1273 residues), 1615.3 bits, see alignment E=0 PF13116: DUF3971" amino acids 505 to 791 (287 residues), 311.2 bits, see alignment E=8.4e-97 PF13502: AsmA_2" amino acids 1029 to 1268 (240 residues), 238.9 bits, see alignment E=6e-75

Best Hits

KEGG orthology group: None (inferred from 100% identity to vcm:VCM66_0405)

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1291 amino acids)

>CSW01_02210 DUF3971 domain-containing protein (Vibrio cholerae E7946 ATCC 55056)
MISTVTRLGRILMWLLVSLLIVLALAVTALRILLPQMNRFQAEIQHWLNQNSSVQVAIAD
VQGYWRNTHPSLSLQTLQAHWPDSNDIQLNAASVEIEFDLLQSLWQRQPVVADLTVNGLV
LDLRAIDWLALEQNPNPKQSRQGRVVKQLDDLLLRQLDDFTLKNSAILYRTFAGDLRQLD
IEKLRWQNQGLRHFAEGVVSIAGININSLLVSANFIDHGSLRDVSGDFYVSADKVRVLPW
LTRYLKDQTGIQKGQVSLNAWATLEHNQPKDGYVEFKPSELVWQNGEQTHELLLESGIVE
LKPTEKGWQVNAHSLRLRSDDELWPLLDVAMDWQPDEWRLNLSQLNIENLLPLAKLIPES
QTLNHWLTTLKPKGTLEDVRIAKGATLESLRYSASLIDGGIAQWELLPQVNALQAQIQGS
PSKALIKASMVDDVLPYGEVFQAPLNIRQGAVNLVWQQEQYGWSLWSDKVTVATPDLQAL
GAFRLDFPDDASPFLSFYAEADLFNAGETWRYLPTLALGRELTDYLSTAIQAGQVNTAKL
IWYGALDQFPYRMHNGVFQAWVGLKEAKFAFDTAWPPITDLQLDLLFENDAMYLDSRSAT
LMEVSAERITGRIPELAELGHIEIEAVASAQQGNAIRNYMMATPLVDSVGAALTTIQVKG
PVRSEFQLNIPFHSGAEPRAWGFAELSNNAVDIDTPPMSLTSVSGKIEFDNDRVSAAGLD
ARLLKQPVSIDFKGEDAKRGYAVGIDMVGDWEVKPLIPFVGERWLSRVKGHAPWQASVDI
QLNDVGFTYQLDGKADLRGLESRYPFPLKKALKVKGQALLQASGNQEMVSARLQLPQAKY
QAEIDLTPKVPVLKATNLVLGQGSFKISPVVGHHVQLRSQAFNLDDWLSILNEKPAPKSR
KSKLASLNTPAFPMPERVDAAVKELTFAGLDWHDVDLNARRKDLGWLLNLDSQEIKGQAN
YIEPYDLSIALERLHLFLPQLEAGEEALLVDLDRQKLPLITDFDRKFHQWMPNLTLTIKD
FWLQGYKIGQANVDFQRQGDTLLWKSIDFTSGTNQLHVNGTWTLTDTQSRTQMNLDMKGD
NNSDLMARFGINSGIQRAPFEITASTQWDGAPWSMQVNTLQGKVDTKLGKGVISDVSGAA
RLLGLFSLDSIIRKMQLDFSDVFDKGMAFDSISGSGELSQGIFVTNNIKMDAVAGEMTIK
GLADLNTRTVDAEVNFVPDITSGIPVLTAFAVTPQTALYVLAITTVISPVVEVFTQVNYE
VKGPLDSPTVKELSRSKGEFKLPEKLRKLTE