Protein Info for CSW01_02180 in Vibrio cholerae E7946 ATCC 55056

Annotation: MSHA biogenesis protein MshQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1252 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF20419: DUF6701" amino acids 648 to 1250 (603 residues), 408.9 bits, see alignment E=2.9e-126

Best Hits

KEGG orthology group: K12287, MSHA biogenesis protein MshQ (inferred from 100% identity to vch:VC0414)

Predicted SEED Role

"MSHA biogenesis protein MshQ" in subsystem Mannose-sensitive hemagglutinin type 4 pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1252 amino acids)

>CSW01_02180 MSHA biogenesis protein MshQ (Vibrio cholerae E7946 ATCC 55056)
MNKWLAKTLVGLGCFALLSAYALAFQDIDHSIYFPSVVQGHGSCSGAPNPQLIQYNSARI
NGTNNSVVDFCSINATNERPNTRCDNNLCQVSGNTVPSLSLAGINAFKTSSVSGTEIGWC
NSGQSILLSKTNIGTVQLYASCTLSFTGQTEYKIKSLDMGSGATLVLSSGDYWIESLQLN
QGGEVVVDGDVRLFIRNNSDWNSAQINVSGSGNLTIVGYNNITLNQSNQVKAYLYVGGTL
TLHNTSVINGRVTSRRLFMEANTEINQNEQQGYACFTDDFNRSSLGQNWIPYTSSGNFTP
SIISNRMRLTEAITNQATAVTYQRIFPAAGNLVTVEFDYYAWANLTGNGADGVSVIFSDA
TVTPRTGGFGGSLGYAQRTDTNPDTPGFAGGWLGVGLDEWGNYSNATEGRQGGPGFRQQA
VAIRGSESANYQYLVGTAANLNPKLDVRRTCQWWGCSFSGAGPGHRYFITIDSRSGGGVW
VRVDRSVNGTMQTVIDWHNVLSNPNQGATPADFLLSLAGSTGASVNNHEIENFKVCALKS
RPVGQLIDHFRFTLPQQGLTCSASEVQIKACANDNCSQLYTDPVTATLSPNSAPSATGGW
LGGSQVNFNNGIATAQLRRNSVGNVSVNVLGSTPASKPFQVNLCSYTNNPNSYSTANCTV
NFADSGFIVDVPNAYANQTVTGTIKAVRKDNASQQCLPSFGNVQKSVAFWSEYLNPTANN
SGFQSVSVGVNGTPIGQSANNATSISLNFNQNGEASFPISYREVGSLALHARFTGSGDEQ
DLLLEGQDSFIRVPRALVLSANNPYNPTHPNGQCSAENISCNVFARADENFDLIIRAVVA
APIEDNDFTNNLTAYNYQQQNIALQHTLVQPSAGQSGVLGVNEYTHLLGGTTTIAQKVSE
VGVFDFSLFAPTHYLGLDLASANLPIAVTSTGSIGRFIPAYFSVSPMSNVTLDAACKTGN
AFSYLGQPFEYSNSPGLYLQPKSANNADTQNYLIDPWWRYNNQWNGRTYSDSANGVNLGF
DNLQTSPISRQALNNSGIVLNGERVWYQKPLQPKPVFNSAFDLTLNASNLTDQDGVCYRQ
NASSPCLGYTFSHIDGAMPLYWGKLVIQDVYGPETQASEQPIYVEHFTNNGFVRTIEDSC
TALPAITGFTLQSDPNNNGYTVLTTGVAVPPQVLAEHSAANLNSGQRAIRFSAPGAGALG
VIDSVLDLNAHNLLWLAEDKDGDNNFDQTTQGRAQFGLYRGSDRVIWWRESN