Protein Info for CSW01_01745 in Vibrio cholerae E7946 ATCC 55056

Annotation: EamA family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 54 to 74 (21 residues), see Phobius details amino acids 80 to 102 (23 residues), see Phobius details amino acids 112 to 131 (20 residues), see Phobius details amino acids 138 to 156 (19 residues), see Phobius details amino acids 168 to 192 (25 residues), see Phobius details amino acids 204 to 223 (20 residues), see Phobius details amino acids 235 to 261 (27 residues), see Phobius details amino acids 267 to 288 (22 residues), see Phobius details amino acids 296 to 312 (17 residues), see Phobius details PF00892: EamA" amino acids 22 to 153 (132 residues), 58.6 bits, see alignment E=3.8e-20 amino acids 174 to 312 (139 residues), 55.7 bits, see alignment E=3.1e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to vch:VC0337)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (313 amino acids)

>CSW01_01745 EamA family transporter (Vibrio cholerae E7946 ATCC 55056)
MLNGILSALITPNRKDDAMGYEWLALAAACLWAIASLLSITPAKHLGSFAYSRWRMGCTS
VILTTIALFSGGWSTVHSSAIPAMMLSGFIGIFIGDTALFACLNRMGPRQSGLLFSCHAV
FSAVLGYFLFSESMTKQELFGSTLVFSGVLMAIFFGRRGQTGPSLDSINGSVWVGIGLGL
TAALCQALGGIIAKPVMQTEIDPIAASAMRMITAFAAHSLLRLTGARIARPTQIITLNIF
LVTALNGFIAMAVGMTLILYALREGNVGMVALLSSTTPIMLLPLLWIYTKQCPNRYAWLG
AILAVGGTSLLVS