Protein Info for CSW01_00525 in Vibrio cholerae E7946 ATCC 55056

Annotation: methyl-accepting chemotaxis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 659 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF08448: PAS_4" amino acids 77 to 178 (102 residues), 41.1 bits, see alignment E=4.6e-14 amino acids 193 to 300 (108 residues), 47.9 bits, see alignment E=3.6e-16 TIGR00229: PAS domain S-box protein" amino acids 77 to 178 (102 residues), 27.7 bits, see alignment E=1.3e-10 amino acids 194 to 304 (111 residues), 54.3 bits, see alignment E=7.6e-19 PF13426: PAS_9" amino acids 78 to 176 (99 residues), 36.1 bits, see alignment E=1.6e-12 amino acids 201 to 298 (98 residues), 44.9 bits, see alignment E=3.1e-15 PF00989: PAS" amino acids 192 to 285 (94 residues), 38 bits, see alignment E=3.8e-13 PF08447: PAS_3" amino acids 207 to 292 (86 residues), 57.1 bits, see alignment E=4.5e-19 PF00015: MCPsignal" amino acids 411 to 565 (155 residues), 180.8 bits, see alignment E=5.4e-57

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 100% identity to vch:VC0098)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (659 amino acids)

>CSW01_00525 methyl-accepting chemotaxis protein (Vibrio cholerae E7946 ATCC 55056)
MGLLARLFSTAPHHPTQPAEVKPDPLMQSPVTTETTALQPEPQVAPYQTDLALTTPESDL
TPQVNQAFVQVIREHLALLECEPNGTICYASDAFAHLCRVSAEAMVGADFANLWRTHQQP
SVQRLLQDAKKGHPVSAELQLSRSQEAIWIKADLYPIKAINGQLQNVVVLLQDITAAKLE
KIDRSGQMNAVNLTQAVIEFTLDGTILTANQNFLQTVGYQLDEIQGRHHSMFVDEQYKQS
QEYQHFWQRLRSGEFFVDEYKRFGKGGKEIWIQASYNPIMDSEGKPYKVVKYATNVTQRK
MVVNEVKRVMTALSSGDLSAQLTHPFEGEFAELGEVISQFIVTLRQIITDINSVAATIKL
AATEISNGNTDLSSRTEQQASNLEQTASSMEELNSTVRQNSDNAMQANILAGKATEIAAS
GGELIEQVVVTMASINESAQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFSVV
ASEVRSLAQRSANAAKDIKALISDSVSKISNGNELVDRSGSTMKDIVVSIKRVHDLMADI
ASASAEQATGINEVNQAVNQMDEMTQQNAALVEEAAAASESLLAQAEQLYDHVAMFRLPD
QDTSAPSLLKAVNKRPQSAPVTRHPASHIAKTPAKITAKASSRAQPVMQVAHDEEWESF