Protein Info for CCNA_03665 in Caulobacter crescentus NA1000

Annotation: DctA-YdbH superfamily protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1079 transmembrane" amino acids 28 to 49 (22 residues), see Phobius details PF11739: YdbH-like" amino acids 39 to 1014 (976 residues), 135.2 bits, see alignment E=2.1e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_03665)

Predicted SEED Role

"Putative uncharacterized protein ydbH"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3CCS4 at UniProt or InterPro

Protein Sequence (1079 amino acids)

>CCNA_03665 DctA-YdbH superfamily protein (Caulobacter crescentus NA1000)
MMAEASTEPTPDNAARTAPSPRARLVDLGLEAVSLSMLAVIATGLVVWSGRREISRELAE
SWLRERGIEAAVQLEDVDATGFVGTVRLGPRNAPIFTADRLEVAYDLSTPWSGGAFVIQT
KAVRIVRPRIAASLDAKGLRLGALQPLIDEVLKAPRRPDAPLPTILIENARLDLTTPGGR
ARITGDASLDEGQLRRLDARLAPLRYAVRDLAIDARGASVTARKRGDRLTIEVTLALDSL
ETSAADLAGTTARLSADLPYPDLARMTAQGPLAAQLALRADTARLSDGQIEGLAADLSWN
GRLDGGTRDFALMGKGRAALRGDRLSAPSLQARDTTLALALDRIEGERRDGRLSLRGATT
AELRAGQAIAGGVAVRNLRGQGASESLALATDAQGARLEGPLKIETRADRLAIGALALAS
ARLAASGRIGQDAQGLTLSLQGAASGASGISGPDAERFAALIPKPAYGAPLSRALGTFEL
AAPGLGLEIADGRTRVTLSREASLSAPNGALLTAAAPGGLLLDAGPSGARGGLRAVLSGG
GLPTVRLAASDWRAVGGVVTSPLTLAAEGFDLPPVQGVTGQIDGQARIAGGRFTLVTRQC
APVTAKAYALGESPVTAIKALVCPTAAPLLAAGPGGWSAGLRFQDGEGALASAQARLETI
RGEASLGGTRGFERAQVRVDSAAVADAAPERRFNPILARGRLGLSSGLWTGDFQATTPVG
APLGAIRLRHVVATGRGQADIDASKLAFAPGGLQPGELSPMAAFARQAKGPASFTGVFAW
DQAGATSRGRLVADRIDFTSPIGFVATLDGAVDFTSLAPLASAPDQTMRVVKIDSLVPLT
GVESVFQLGAEMLHVSKATFEAAKGRVSIEPIDVPLGADKTIKGAIVIQHLDLGELIAAS
SLADRIKIDAVVDGRLPFTFGPEGLRFQNGQVRAIQPGRLEIARTALSNVAASPADAPGA
PPSQPPGQVNAIQDFAYQAMENLAFDQLEAGVNSTDNGRLGILFHVKGQHAPKVAEKARV
GILDLLRGRAFDKRIALPAKTPVDLTLDTSLNFDELLDAWRRSIAGEDTEPPRSGPVQP