Protein Info for CCNA_03410 in Caulobacter crescentus NA1000

Annotation: peptidoglycan-specific endopeptidase, M23 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 270 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details PF01551: Peptidase_M23" amino acids 93 to 189 (97 residues), 95.2 bits, see alignment E=1.1e-31

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_03410)

Predicted SEED Role

"peptidase, M23/M37 family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3CD72 at UniProt or InterPro

Protein Sequence (270 amino acids)

>CCNA_03410 peptidoglycan-specific endopeptidase, M23 family (Caulobacter crescentus NA1000)
MSLALSPQHLRVALFSMLGIAAMVIALNGAVAMSEWIARAPTSSAIPAVAQPAPEPEVQA
PPPAFVFDAPLPGRVINSPFGLRQMPWEESGRLHQGVDIAAPAGAAVKVAAPGVVKATGV
SATYGRYVLVVHKGGLSTLYAHLARPARSVKRGAYLRRGDIVAFVGNSGRSSGSHLHFEI
RKGDKPLNPSFFLGRTFAEADDLPLRAAGRVSRKVHKATVSRWPPGVTKPAKEKVQLARL
KTGRAKAAIPVSTVPAPAASTALSSAEAAI