Protein Info for CCNA_03289 in Caulobacter crescentus NA1000

Annotation: HicB-family RNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 131 PF15919: HicB_lk_antitox" amino acids 4 to 124 (121 residues), 150.7 bits, see alignment E=1.1e-48

Best Hits

Swiss-Prot: 38% identical to YO14_BPHC1: Uncharacterized 14.9 kDa protein in rep-hol intergenic region from Haemophilus phage HP1 (strain HP1c1)

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_03289)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3CB85 at UniProt or InterPro

Protein Sequence (131 amino acids)

>CCNA_03289 HicB-family RNA-binding protein (Caulobacter crescentus NA1000)
MADYIALIHKDADSAFGVSFPDLPGCISVGETLEEARANAEEALALHVEGMIEDGETLPA
PSALDEVMAAPGNRDGVVILVPLKTVQPRTVRVNITLPETTLREIDAFAETYGYTRSGLL
ARAAKQMIDAA