Protein Info for CCNA_03252 in Caulobacter crescentus NA1000

Annotation: CopY/TcrY-family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 126 PF03965: Penicillinase_R" amino acids 5 to 116 (112 residues), 49.9 bits, see alignment E=1.9e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_03252)

Predicted SEED Role

"Transcriptional repressor, BlaI/MecI family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3CCU4 at UniProt or InterPro

Protein Sequence (126 amino acids)

>CCNA_03252 CopY/TcrY-family transcriptional regulator (Caulobacter crescentus NA1000)
MTDPSDLELEVLKAFWRGGAMSAREAQGLIEPELGWSASTTRTVLERMVAKGLLIRRAVH
GLAVYEAKKAKVDVIGGVLNRLRGLLEIDGRLPASAFSGSQILSETEIQELEALLNAKPP
VDGEAK