Protein Info for CCNA_03214 in Caulobacter crescentus NA1000

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 transmembrane" amino acids 56 to 77 (22 residues), see Phobius details amino acids 83 to 103 (21 residues), see Phobius details PF06170: DUF983" amino acids 30 to 114 (85 residues), 113 bits, see alignment E=3.3e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_03214)

Predicted SEED Role

"conserved hypothetical protein in cyt c oxidase gene clusters"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3CCP1 at UniProt or InterPro

Protein Sequence (136 amino acids)

>CCNA_03214 hypothetical protein (Caulobacter crescentus NA1000)
MADASYPNAPTPIRAGLKCCCPRCGEGKLFQGFLKLAPACDQCGLDYGFADPADGPAFFV
MSGVGILVTAVFAWVEVVYRPPMWVHLVTVFPGFLLGCLMTLRPVKSWLVAAQYINKAEE
GRFESLGRHDFDSRRL