Protein Info for CCNA_03062 in Caulobacter crescentus NA1000

Annotation: cell wall hydrolase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 370 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details PF07486: Hydrolase_2" amino acids 164 to 273 (110 residues), 91.9 bits, see alignment E=1.7e-30

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_2967)

Predicted SEED Role

"Cell wall hydrolyses involved in spore germination"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3CDU3 at UniProt or InterPro

Protein Sequence (370 amino acids)

>CCNA_03062 cell wall hydrolase family protein (Caulobacter crescentus NA1000)
MYIKSQTRADARGLVGAVLVGSITGLALGGVYLLGGLAQSASTHARVARLAEGASGDFSE
AAMLSASTRMDPGALAVAKRHDPYLFAAVDQRDRQSAMLAARLEGAGSALLPGQSGRTGP
LMLRASFGTMFNGAGAGPFQLGNALQSSRELECLAQAIYYEARGETPSGQAAVAQVVLNR
VRHPAFPKSICGVVFQGAYNRTGCQFSFACDGSMRRVRDTGAWSRARKVATRVVAGTMES
PVGSATHFHTVHVSPGWGPRLQRVTQVGMHIFYRFGRRSGGSIQSPTVDDIAPSEIASLT
ADGHGPVAYASLARPEPANSAPGVGGPIGPVSEPASAPTLTPAKASAPTHDKPALEGLKA
TVGAASGAAS