Protein Info for CCNA_02993 in Caulobacter crescentus NA1000

Annotation: NADH-ubiquinone oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 314 to 333 (20 residues), see Phobius details amino acids 352 to 372 (21 residues), see Phobius details amino acids 380 to 398 (19 residues), see Phobius details amino acids 410 to 427 (18 residues), see Phobius details PF04321: RmlD_sub_bind" amino acids 1 to 114 (114 residues), 29.3 bits, see alignment E=1.2e-10 PF01370: Epimerase" amino acids 3 to 153 (151 residues), 45.1 bits, see alignment E=2.1e-15 PF13460: NAD_binding_10" amino acids 7 to 196 (190 residues), 48.5 bits, see alignment E=2.4e-16 PF13781: DoxX_3" amino acids 322 to 420 (99 residues), 81.1 bits, see alignment E=2e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_02993)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3CBZ3 at UniProt or InterPro

Protein Sequence (430 amino acids)

>CCNA_02993 NADH-ubiquinone oxidoreductase (Caulobacter crescentus NA1000)
MRVVVIGAYGLIGSSVVARLLADGHDVVGVGRDLVQARRRFPALVWKHADLATFGVADWL
ALLDGVAAVVNCAGALQDSPRDDLNAVHVEGVRRLAQACEAKRARLVHISAAGVEADKPT
AFNTTKHEAEALLAAMPALDWVVLRPGLVIGPAAYGGTALLRGLAGFPGFSPVVHGQSRV
QVVATDDVAAAVARCLAPDAPLRRRLDLVHAEAVTLTDLVSRLRGWLGFPAAPVIDLPPV
LARITAAGADALAFLGWRSPMRTAALAQLRMGVRGEADDAARLALELKSLDALLAAMPSG
VQERWFARAYFAKPLILACLFAFWLVSGLIGLTVGFEPAVATLTTAGVGRELAVAAVVGG
SVADIALALLLAHRRTAAPALKGMLLVTAGYLVGGALVRPDLWLDPLGPLVKSIPAAMLA
VAALATLEER