Protein Info for CCNA_02668 in Caulobacter crescentus NA1000

Annotation: ribosomal protein L11 methyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 209 PF05175: MTS" amino acids 65 to 139 (75 residues), 39.2 bits, see alignment E=2e-13 PF10294: Methyltransf_16" amino acids 65 to 169 (105 residues), 31 bits, see alignment E=7.5e-11 PF06325: PrmA" amino acids 70 to 123 (54 residues), 56.5 bits, see alignment E=1.2e-18 PF13847: Methyltransf_31" amino acids 71 to 173 (103 residues), 28.2 bits, see alignment E=5e-10 PF13649: Methyltransf_25" amino acids 74 to 159 (86 residues), 41.2 bits, see alignment E=7.6e-14 PF08242: Methyltransf_12" amino acids 75 to 162 (88 residues), 33 bits, see alignment E=2.9e-11 PF08241: Methyltransf_11" amino acids 75 to 159 (85 residues), 30.1 bits, see alignment E=2.2e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_02668)

Predicted SEED Role

"FIG00482194: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3CB67 at UniProt or InterPro

Protein Sequence (209 amino acids)

>CCNA_02668 ribosomal protein L11 methyltransferase (Caulobacter crescentus NA1000)
MDLDVFIREHLPLEPTPGVPEVRLHRAGPRSGLSRLAKADADFGSPYWARPWGGGLVLAR
HVLDRPETVAGRTVLDLGAGSGLVAIAAALAGAAEVTAIDVDPYAVAATRLNAAANGVAV
RIIRADPLDGEPPEVDLVLVGDLFYAPDLAARTEALLRRCRTAGVAVLIGDPWRAPLPVD
RLSVVARHPVADYGDVEGAVRDAAVFTLI