Protein Info for CCNA_02417 in Caulobacter crescentus NA1000

Annotation: biotin synthase related domain containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 TIGR03916: putative DNA modification/repair radical SAM protein" amino acids 9 to 396 (388 residues), 543.5 bits, see alignment E=1.9e-167 PF04055: Radical_SAM" amino acids 67 to 203 (137 residues), 37.6 bits, see alignment E=1.3e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_2332)

Predicted SEED Role

"Biotin synthase related domain containing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3CAL3 at UniProt or InterPro

Protein Sequence (409 amino acids)

>CCNA_02417 biotin synthase related domain containing protein (Caulobacter crescentus NA1000)
MLDMAVLDLRRKLAILSDAAKYDASCASSGAVQRNSLNGKGVGSTEGMGICHAYAPDGRC
ISLLKILLTNFCIYDCAYCINRISSNTPRARFTVQEVVDLTLNFYKRNYIEGLFLSSGVI
RSGDYTMEEMVRVAKSLRLDHDFRGYIHLKLIPEASPELAAEAGLYADRVSINIELPRDD
SLKALAPEKDPTDIKRAMGRMRLAIDDHAEPGRKARRRAFARSQSTQLIVGADEAKDGDI
LSRSANLYGAYRLSRVYYSAFSPIPDASHRLPLVRPPLLREHRLYQADWLMRFYGFAQSE
IVAAGQDLDLSVDPKTSWALRHRDRFPVDVQIADKETLLRIPGLGAKAVARVLVARRVTR
LTLDDLKRVGAVVKRAKPFVVTADWRPGALTDRDDLKAVLSPAVQLSLF