Protein Info for CCNA_02410 in Caulobacter crescentus NA1000

Annotation: alpha-methylacyl-CoA racemase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 396 PF02515: CoA_transf_3" amino acids 2 to 373 (372 residues), 345.9 bits, see alignment E=1.5e-107

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_2325)

Predicted SEED Role

"Hydroxyproline dehydratase putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C9Q0 at UniProt or InterPro

Protein Sequence (396 amino acids)

>CCNA_02410 alpha-methylacyl-CoA racemase (Caulobacter crescentus NA1000)
MLEGLRVVELATYIAAPGAAGVMADWGADVIKVESPEGDPMRRFFDTIGSDQDANPVFEL
DNRGKRAVVLDIRSDLGREALKALVATADIFLTNVRSAALARAGLDYEALKAVNPRLIYC
SLSGYGLTGPDADKPGMDVAAFWSRAGVGAITAPKGTEPFPIRTGMGDHVTSLATVSAIL
AAVHERTRTGVGRLVETSLLRTGVYAIGSDMAIQLRFGKLASTRGRREAVQPLANFYKTS
DGRWICLLPRQGSVDWPQIAAAAGRPELVDDPRFATAKARREHGQALVDIFDEAFGSMTY
DAAAAALDAGDITWAPYQTPRELALDAQAEAAGCFVDTPDGAGGTFKAPAAPARFPGAPN
GPRGPAPKLGADTAAVFRELGFSEDQVAALTRVSAA