Protein Info for CCNA_02211 in Caulobacter crescentus NA1000

Annotation: zinc ribbon domain protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 380 transmembrane" amino acids 104 to 127 (24 residues), see Phobius details amino acids 264 to 284 (21 residues), see Phobius details amino acids 296 to 314 (19 residues), see Phobius details amino acids 319 to 340 (22 residues), see Phobius details amino acids 352 to 378 (27 residues), see Phobius details PF12412: DUF3667" amino acids 75 to 119 (45 residues), 66.8 bits, see alignment 4.9e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_02211)

Predicted SEED Role

"FIG00483131: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3CA43 at UniProt or InterPro

Protein Sequence (380 amino acids)

>CCNA_02211 zinc ribbon domain protein (Caulobacter crescentus NA1000)
MVDLDAAGGAVSGGLVAGALEKPEGKAGAAHDGTCSDCGHAVSGNFCANCGQPTHVHRTL
LHLGEELLHGVMHFDGRVWRTVPLLVTNPGRLTREWVAGKRARYVSPLGLFLFTIFLMFF
VLSFGAGGKALDGGKPSTSLAAAEDVVAKTRQQVAEARAELDAAEAASKGDPAAQAGLTE
ARQRLEITSDGLKQAQAKLDELKSTKASTRPDGLQPGSWQAELRDATTSGKLKSVTGGNQ
VSQTILKKLANPDLALYKLQQTTYKFSFLLVPLSIPFVALLFLWKRGFTLYDHGVFVLYS
LTFMAMLSMALGLLGGVSWLSGLVALAAVFAPPAHMFAQLKGAYGLSVFSALWRTVLLLL
FCVIVLSLFLIAIIYLGLGH