Protein Info for CCNA_02128 in Caulobacter crescentus NA1000

Annotation: acyl-CoA dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 transmembrane" amino acids 96 to 114 (19 residues), see Phobius details PF02771: Acyl-CoA_dh_N" amino acids 53 to 130 (78 residues), 59.7 bits, see alignment E=5.2e-20 PF02770: Acyl-CoA_dh_M" amino acids 134 to 227 (94 residues), 69.6 bits, see alignment E=3.2e-23 PF00441: Acyl-CoA_dh_1" amino acids 239 to 395 (157 residues), 58.7 bits, see alignment E=1.2e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_2049)

Predicted SEED Role

"Acyl-CoA dehydrogenase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3CB66 at UniProt or InterPro

Protein Sequence (401 amino acids)

>CCNA_02128 acyl-CoA dehydrogenase (Caulobacter crescentus NA1000)
MADFGATDLDAFRADTRAWLEANYPKSLNAPMGEDEAPWGGRKMVWKNPDAKLWLDRMAE
RGWTAPMWPKEYGGGGLSKAQNKVLEQELRRLKARPALMSFGVWMLGPVLLEYATEEQKQ
RFLPAIVRGETRWCQGYSEPGAGSDLASLQTKCEDKGDHYLINGQKVWTSYADQADWIFC
LVRTDTSKKHEGISFVLFDMTSPGVEARPIKLISGSSPFCETFFDNVKVPKEQLVGKLNG
GWDIAKRLLQYERQNISASGFGGGGGLSVVEAAKKELGVDSEGRIADGDFRARLAAHSMD
AHAFMLTVRRAEAESKQGSGPSAAVSIIKYAAAKMNQERTELLVEALGLQGLGWSGEDFS
AEELAAPRAMLRAKGNSIEGGTSEVNLNVVAKRVLGLLDHQ