Protein Info for CCNA_02125 in Caulobacter crescentus NA1000

Annotation: polar development protein podJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 974 transmembrane" amino acids 636 to 662 (27 residues), see Phobius details PF08238: Sel1" amino acids 757 to 793 (37 residues), 29.1 bits, see alignment (E = 1.1e-10) amino acids 794 to 828 (35 residues), 34.1 bits, see alignment (E = 2.9e-12) amino acids 831 to 865 (35 residues), 31.9 bits, see alignment (E = 1.5e-11) PF01471: PG_binding_1" amino acids 919 to 969 (51 residues), 55.2 bits, see alignment 6.6e-19

Best Hits

Swiss-Prot: 100% identical to PODJ_CAUVC: Localization factor PodJL (podJ) from Caulobacter vibrioides (strain ATCC 19089 / CB15)

KEGG orthology group: K13582, localization factor PodJL (inferred from 100% identity to ccs:CCNA_02125)

Predicted SEED Role

"TPR repeat, SEL1 subfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See B8GXA0 at UniProt or InterPro

Protein Sequence (974 amino acids)

>CCNA_02125 polar development protein podJ (Caulobacter crescentus NA1000)
MTAASPWSVKGIDPKAREVAKDLARRSGMTLGEWLNRMIIEGDGQTADPRLAGDDVPNRA
YLEIVKDDAPPRIEIAEHPADEVGRVALALDRLTQRIEAAEGRNAAAITGIDHSVRDALT
RLGASEREQIAVAARFEGAVDELKTEQARATERLRRIESEAAGPRSAEALRALEGALGKV
AGHLYEGEARTREAIATLEAKLNQQSSGDPSALVEAVVARLGERLEAAETRTSDALRELG
ASFQALDQRLGAVETANPATGVQEGLDSLAATLTQKMEAARLEMAAKLRESADGRFDRME
RKLGEMAAHVQAAEQRSAQAIERMGREIVGVADAFNRRVHAAESRNASAIEQVGGEVARI
AASVEHKLNRADSVQAQALEKLGGEIARITEKLAERIGSAERRNALAIDDVGEQVARVTE
RLNQRHERSSQELVDRIRQSEERTLRMLEEAREKIDSRLSEAQRKLEAAPPSPPPAQAPA
PVATAQRPVPPAASPFEDNYFSQAASFSTSEDEADAFDAPPAPARSFEVAEFPAAEPEEP
AFAHDDYAIADGFEPESPRYEVEPEVSDFAPAEPSRPMSTRDIIEQARAAARAAAASEGK
GGKAKSAKKEKASKASGSLFSGFGGFSTKKSKARLGATVTTALVVFAAAGALGAGVGGLL
LLNTDDGNNSPSRVAQAIAGRKADVEVNGPEADTTPGAPRAAVALTTGKVVPAEVEAPAA
PPTNEAKALFEDAVRKIESGDRSGVELLKRAANGGYPAAQFYLSKMYEGGKNGVKVDMAE
ARRWSERAANGGDPRAMHNLALYYFKGEGGPRNSTTAASWFRKAADMGLVDSQFNLAQLY
ESGLGVSQNPAEAYKWYVIAGRAGDSTARGRATALRSQLTAEAQQTADRSALAFRPQTQV
QTASLSSAAPAAANANLGVAQRVLSQLGYYQGPRDGVSSPALRMAIAAYQRDQGLPPTGS
VDAETLNRLSVYAR