Protein Info for CCNA_02075 in Caulobacter crescentus NA1000

Annotation: peptidoglycan binding endopeptidase DipM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 609 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF01476: LysM" amino acids 124 to 164 (41 residues), 22.9 bits, see alignment 6.7e-09 amino acids 173 to 216 (44 residues), 44.5 bits, see alignment 1.2e-15 amino acids 297 to 338 (42 residues), 48.1 bits, see alignment 9.2e-17 amino acids 347 to 390 (44 residues), 42.4 bits, see alignment 5.4e-15 PF01551: Peptidase_M23" amino acids 502 to 603 (102 residues), 99.7 bits, see alignment E=8.7e-33

Best Hits

Swiss-Prot: 100% identical to DIPM_CAUVN: Cell division protein DipM (dipM) from Caulobacter vibrioides (strain NA1000 / CB15N)

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_02075)

Predicted SEED Role

"LysM domain / Lipoprotein NlpD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C9Q9 at UniProt or InterPro

Protein Sequence (609 amino acids)

>CCNA_02075 peptidoglycan binding endopeptidase DipM (Caulobacter crescentus NA1000)
MRQLWTQAAVIALTAGTLGAPAHASGQSGQRFTPNFPITQPAAPPPGETIQAQPGEAESL
PRPTPIPVQSAPPIAQAELPPPAPVSTPAPAPQPVLRATPPRTVVTTTVTGPVVEVAGKP
QVRVVESGDALDAIARGMGSTRAELVKLNDLEPPYRLKLGQKIKGPATTAKAYVVQTGDT
MFAIAKRFNVTAAALAEENDLKSGAAIKKGQKLLLPDGYKDKGPIKTTQVIPGTPATMVA
EAEPAPATTRPATPAATPSRPVRQPVSEETSEPATTSTTTLSVTGSVVTVAGPRQVHTVK
SGDTLTAIARKFDMSVSELAEANKLDTEKPLKLGAKIKGPATTQKAYSVQTGDTLGEIAK
RFNVSVKALAAENNLRATASLKKGQKIALPDGFRDKGPIRTTTTTRPATPPANTYARVDS
SAAAASTPSSPVPYTPSGAAPRPSAPVAAQPITPPPSSGRTIIETAAAPTEAEIIASGKG
KFAWPLRGDIISSFGVKGTGQRNDGLNIRAPQGTPVLSSADGEIAYAGNQVPTFGNLVLV
KHADGWVTAYAHLSSTNVKMRQQVKQGEQLGTVGATGGVNEPQLHFEMRYAPTVKDKAKP
VDPALVLPR