Protein Info for CCNA_01968 in Caulobacter crescentus NA1000

Annotation: pentapeptide repeats containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF13599: Pentapeptide_4" amino acids 45 to 121 (77 residues), 33.5 bits, see alignment E=6.1e-12 amino acids 104 to 181 (78 residues), 40.6 bits, see alignment E=3.6e-14 amino acids 169 to 228 (60 residues), 32.9 bits, see alignment E=9.8e-12 PF00805: Pentapeptide" amino acids 50 to 81 (32 residues), 32.9 bits, see alignment 5.7e-12 amino acids 84 to 114 (31 residues), 39.3 bits, see alignment 5.8e-14 amino acids 117 to 151 (35 residues), 30.2 bits, see alignment 4e-11 amino acids 154 to 193 (40 residues), 41.4 bits, see alignment 1.2e-14 amino acids 194 to 229 (36 residues), 33.8 bits, see alignment 3e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_01968)

Predicted SEED Role

"pentapeptide repeat family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3CAS8 at UniProt or InterPro

Protein Sequence (289 amino acids)

>CCNA_01968 pentapeptide repeats containing protein (Caulobacter crescentus NA1000)
MSRLGVSIAALTLSLLAMTGQAHAWAEDKDVAKLTSFGGMCANCDLAGRKLMNAKFTGAN
FAKAVLIGADLRGAMFYGSDFGWADLSRADLRGAEMRGANFTRANFTDARMSGVESSGAN
FAQATLVRVDLSSAELHAANMAGANLQKARFANAELIAANLSGANARDADFSNADINHAN
FQGARFDGARFHNADMTGSNLRGGIFNSADFRNADLTMVNLSGADLSSARGLEQEQLDEA
CGDSSTRLPSGLSVRTCNGLRSGQHFMLLRAVPKPPAPPAPPKAPKGPK