Protein Info for CCNA_01938 in Caulobacter crescentus NA1000

Annotation: ATP-dependent transporter SufC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 249 TIGR01978: FeS assembly ATPase SufC" amino acids 2 to 244 (243 residues), 359.8 bits, see alignment E=3.3e-112 PF00005: ABC_tran" amino acids 17 to 171 (155 residues), 65 bits, see alignment E=5.9e-22

Best Hits

Swiss-Prot: 59% identical to SUFC_ECOLI: Probable ATP-dependent transporter SufC (sufC) from Escherichia coli (strain K12)

KEGG orthology group: K09013, Fe-S cluster assembly ATP-binding protein (inferred from 100% identity to ccs:CCNA_01938)

Predicted SEED Role

"Iron-sulfur cluster assembly ATPase protein SufC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C8K7 at UniProt or InterPro

Protein Sequence (249 amino acids)

>CCNA_01938 ATP-dependent transporter SufC (Caulobacter crescentus NA1000)
MLKIQNLHARVEDKPILRGVTLDVPAGEVHAIMGPNGAGKSTLSYVLTGRDGYEVTEGSA
SLNGEDLLALEPNERAAKGLFLSFQYPLEIPGVPALTFIRTALNAQRRARGEDEIAAPAF
LKLAKEKAASLKIDFEMLKRGLNVGFSGGEKKRMEIFQMSMLSPKFLILDETDSGLDIDA
LKIVSEGVNALRSPERGMLVITHYQRLLDHIKPDKVHVLAAGRIVASGGPELALQLEAEG
YDRIVGAAA