Protein Info for CCNA_01874 in Caulobacter crescentus NA1000

Annotation: transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 481 PF05598: DUF772" amino acids 58 to 122 (65 residues), 66.7 bits, see alignment E=2.3e-22 PF01609: DDE_Tnp_1" amino acids 241 to 463 (223 residues), 49.7 bits, see alignment E=5.9e-17 PF13751: DDE_Tnp_1_6" amino acids 351 to 466 (116 residues), 49.8 bits, see alignment E=6.4e-17

Best Hits

KEGG orthology group: K07487, transposase (inferred from 100% identity to ccr:CC_1796)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (481 amino acids)

>CCNA_01874 transposase (Caulobacter crescentus NA1000)
MDLSRFVEGCDRRQPTLLPECLDDYVAEENPVRVVDVFVDDLDLGTLGFEGLTPAVTGRP
AYHPAMLLKLYVYGYLNKVQSSRRLEREARRNVELMWLTGRLAPDHKTIADFRKDNGPAI
QAACAQFVVLCRQIGLFGAALVAIDGSKFKAVNTRDKNFTANKLKKRLEQVAEHIAGYLR
DLDTADRQEGEAAETRSERLKEKVERLREQMRWLQTMEAKVAASPDGQVSLTDPDARSMA
TTGRGSGMVGYNVQSAVETEHHLIVAHDVVMTGSDRQQLSSMAARTKDALGVETLDVLAD
RGYFSGEEILACEALGVTPYVPRPLTSGAKANGRFGKQDFVYLPEQDVYRCPSGALLPRH
MTNVENGMTLHRYWDHFSCQSCALKPQCTPSIARRVTRWEHEAVIDAMQRRMDLTPGAMR
QRRRTVEHPFGTIKAWMGSTHFLMKRLPNVKTEIGLHILAYNLKRVIAILGVGPLMKAIQ
A