Protein Info for CCNA_01870 in Caulobacter crescentus NA1000

Annotation: NagC-family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 PF00480: ROK" amino acids 96 to 330 (235 residues), 75.1 bits, see alignment E=7e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccr:CC_1792)

Predicted SEED Role

"N-acetylglucosamine-6P-responsive transcriptional repressor NagC, ROK family" in subsystem Chitin and N-acetylglucosamine utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C8D7 at UniProt or InterPro

Protein Sequence (384 amino acids)

>CCNA_01870 NagC-family transcriptional regulator (Caulobacter crescentus NA1000)
MPASKSRRSQDRVSRGEKLRACTETERRLLSLIRAVGPVSRAELARKTGLAPLSVTRLIA
DLLDRDLVTEGARVVAGRGQPSLPLSLARDAAFSYGVSITEDALSIALIDLSGVVRDAWR
EPFETFDKSAALTRLEKIFDLLATRAAIDRSRLLGVGVAASGFFTGLRRQLNTPLSMEQW
ALSDLDAEFSARLGLPIWIDNDGNAAAAGEALYGVGKTLSSFAYLYVGRGLGGGVVLDHS
LWRGRNGNAGEFTGLLSPDRRADRPTLGLLREMFAADGKAFASIDQMLAELDPASPVIEA
WAKRTAPELNAILSAIAATLDPEAIVIGGRATPALVDALIGQASYYSVPIRDRDRTFPIL
LRSQVVRDVTALGAASMPFSGHFF