Protein Info for CCNA_01675 in Caulobacter crescentus NA1000

Annotation: outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 594 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF17243: POTRA_TamA_1" amino acids 29 to 102 (74 residues), 40.8 bits, see alignment E=2.9e-14 PF01103: Omp85" amino acids 295 to 594 (300 residues), 215.1 bits, see alignment E=2.9e-67

Best Hits

KEGG orthology group: K07278, outer membrane protein (inferred from 100% identity to ccr:CC_1603)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C7Z3 at UniProt or InterPro

Protein Sequence (594 amino acids)

>CCNA_01675 outer membrane protein (Caulobacter crescentus NA1000)
MVLGRTTLALAAVTWLSASAAWADEPMAQIQGVEDRALRDAIQRALSDSKQPPRSRSEAR
RRARQAGEDAIAVLRAEGYYAYTVEPDVTEGDPPRAIVRITPGPAFLLADPHIDWSGSPP
DEGVRQRAVAAMRLTEGEPGRSADVVGAEGRIVAQVAKLGYADVAAEPREVVVDHADRTV
RPTFRIMAGELVRLNGVDVVTKGRTNPEWVGRLAPWVAGDVYDPEDVAELERRLRDTAVY
DSISVSLAGTDKASAEGYRPVVVTLSDRRARTIELGAGYSTSEGAGVDARWIRYNRQKRA
DTTTYALRFAKLEQRLGAEISLPHWRRPQQTLKLNSSVFRNDTDAYNETGATVGVDLTRR
RQTTAYRTFGVSFDLSQTKEQVNRNGLIAGRKLNLATLAGLAAYAWDFSDDILDPKRGWR
LETRAEPTYVAGDTSVPYLKLAGQGSAYLPFGKQDSTVLAARVKLGAILGAGLLDVPASR
RFFSGGGGSVRGYAYQAIGPRLSDNTPQGGISLVETSFEVRQKITDRWSGVAFVDAGAIG
THETPQREDFRAGAGLGVRYDLGFGPIRADIAAPLGRRKGDPKFQIYLSIGQSF