Protein Info for CCNA_01587 in Caulobacter crescentus NA1000

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 482 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 131 to 151 (21 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 207 to 230 (24 residues), see Phobius details amino acids 240 to 259 (20 residues), see Phobius details amino acids 452 to 471 (20 residues), see Phobius details PF12679: ABC2_membrane_2" amino acids 6 to 377 (372 residues), 70.2 bits, see alignment E=1.9e-23 PF12040: DUF3526" amino acids 272 to 440 (169 residues), 139.9 bits, see alignment E=9.9e-45

Best Hits

KEGG orthology group: K01992, ABC-2 type transport system permease protein (inferred from 100% identity to ccs:CCNA_01587)

Predicted SEED Role

"FIG00952399: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C8G6 at UniProt or InterPro

Protein Sequence (482 amino acids)

>CCNA_01587 hypothetical protein (Caulobacter crescentus NA1000)
MSVILSVTRNELRHLVRSRVALTGLILVALLTFAAALTSNAYQADQAGLRERLQHAADQD
FAAQPNRHPHRVVHFGHFAIRPASGLAAMDPGVEAYTGNMIFLEGHRQNSANFGDARQSS
LLVRFGQLSPALVLQVIVPLLLVFIGAGMIAGERERGTLRQSLLAGISGGALLSGKALAL
GLAALAISIPAFGLLLWLGASGGARLSAVGLTALGYVAYLAFWTLLIIAVSATANRSRSA
LIGLVGAWAFMVVLVPRVAPEAAAALAPLPTRVETDIAVQRDLRSMGDSHNPNDPYFAAF
KQKTLKQYGVTRVEDLPVNYRGLLAIEGEKLTSSLFDRYADQAFGAMEAQGRVMDALAVV
SPTVAIRRVSMTLAETDLFAYRRFLEQAEAYRYDLVQRLNRLQATAVTAADDAAKSKNAA
AEARSRISADHWQAMPHFDPKRPSAADVVGRAVPALVALLLWLAAGAVFAARAGHRLNRS
AA