Protein Info for CCNA_01404 in Caulobacter crescentus NA1000

Annotation: glycyl-tRNA synthetase beta chain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 692 TIGR00211: glycine--tRNA ligase, beta subunit" amino acids 3 to 690 (688 residues), 561.2 bits, see alignment E=2.4e-172 PF02092: tRNA_synt_2f" amino acids 4 to 551 (548 residues), 624.1 bits, see alignment E=1.3e-191

Best Hits

KEGG orthology group: K01879, glycyl-tRNA synthetase beta chain [EC: 6.1.1.14] (inferred from 100% identity to ccs:CCNA_01404)

Predicted SEED Role

"Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)" (EC 6.1.1.14)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 6.1.1.14

Use Curated BLAST to search for 6.1.1.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C804 at UniProt or InterPro

Protein Sequence (692 amino acids)

>CCNA_01404 glycyl-tRNA synthetase beta chain (Caulobacter crescentus NA1000)
MPQLLLELFSEEIPARMQAQAAKDLERMAREHLAAAGFLPEALKTFAGPRRLTLVAEGLP
LAQADRKEELKGPRVGAPPQAMEGFLRKAGLTQDQLVERDGVYMAFIEKKGRPTAEIIAE
MVEAIVRGFPWPKSMIWGTKKLRWVRPLKRILCVLDREVVPFAIEGIESGDVTEGHRFMG
EAKPFVAKDFDEYVAGLEKHFVVLDVEERKARILEGCKTLCFARHLELVEDQGLLDEVAG
LAEWPTPVLGDMDPVFLSLPPEVIRTSMRTHQKYFAVRKAGEEGLAPHFITIANIQPADG
GAVIAAGNAKVLSSRLSDARFFWDEDVKVGFEPWLKKLDGVTFHAKLGTMAQRVERIVAL
AAEIAPLVGADVEKTKEAARLAKADLASQMVGEFPELQGIMGGYYARTFGLDHEIADAVR
DHYKPQGPSDAVPTAPVSIAVALADKLDTLASFFAIEEKPTGSKDPYALRRAALGAIRII
LENNRKIGFRMFFVPYLDRMQAEWRAGVVTSPRLNADWLSISTELLAFFADRLKVTLRDQ
GKRHDLVDAVFALGDDDLARIVARVEALDGFLKTDDGKNLLAGYKRASNILKAEEKKGAL
PTGAPAEPAADSAAEVGLYNALRLLDKPLKDALAKEDFTGAMTQLAELRGPVDAYLDGVF
VNEPEHRDNRLRTLATVRDAMGQVADFGLIGG