Protein Info for CCNA_01222 in Caulobacter crescentus NA1000

Annotation: NADH-ubiquinone oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF05368: NmrA" amino acids 9 to 121 (113 residues), 38.3 bits, see alignment E=3.1e-13 PF04321: RmlD_sub_bind" amino acids 9 to 176 (168 residues), 36.2 bits, see alignment E=1.1e-12 PF01370: Epimerase" amino acids 9 to 201 (193 residues), 76.8 bits, see alignment E=5.4e-25 PF01073: 3Beta_HSD" amino acids 10 to 117 (108 residues), 39 bits, see alignment E=1.5e-13 PF07993: NAD_binding_4" amino acids 11 to 119 (109 residues), 25 bits, see alignment E=3.1e-09 PF13460: NAD_binding_10" amino acids 13 to 156 (144 residues), 66.3 bits, see alignment E=1e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to ccs:CCNA_01222)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A0H3C8X7 at UniProt or InterPro

Protein Sequence (317 amino acids)

>CCNA_01222 NADH-ubiquinone oxidoreductase (Caulobacter crescentus NA1000)
MATDARGVVAITGATGFLGRHLVRALAQDGWRPRVLVRRDPVHPFWRDLEVEVVTGDLGT
PRALDRLAKGAEVFIHVAGLIKARTLEGFNRVNQDGARAAAEAARAAGARFILVSSLAAR
EPSLSNYAASKRAGEDAVRAADPSALIVRPPAIYGPGDTETLGLFQLAARSPVLPVLSQT
SRVAMIHVEDAAAKLVAFCRTPVLGLVELSDVRRDGYTWTEIMRGAAHVMGAKPRLIRLP
DPGILTAGALVDAWSSLTNTPSVFGLGKARELLHTDWTPSSAPMAEGVPSKFGLIDGFTH
TVDWYRAAGWLPKNIVA